Protein Domains
CDD http://www.ncbi.nlm.nih.gov/Structure/cdd/cdd.shtml
DBGET search - Pfam http://www.genome.ad.jp/dbget-bin/www_bfind?pfam
DBGET search - PROSITE http://www.genome.ad.jp/dbget-bin/www_bfind?prosite
DOUTfinder http://mendel.imp.ac.at/dout/
ExPASy - PROSITE http://ca.expasy.org/prosite/
FISH Sequence VS. saHMM http://babel.ucmp.umu.se/fish/
GenomeNet - Other Tools http://www.genome.ad.jp/en/gn_kubic.html
interpro  http://www.ebi.ac.uk/interpro/
JustBio - PatSearch http://www.justbio.com/index.php?page=patsearch
NCBI Conserved Domain Search http://www.ncbi.nlm.nih.gov/Structure/cdd/wrpsb.cgi
NCBI Structure - MMDB page https://www.ncbi.nlm.nih.gov/Structure/MMDB/mmdb.shtml
PDB http://www.rcsb.org/pdb/home/home.do
ScanProsite http://www.expasy.org/tools/scanprosite/
smart http://smart.embl-heidelberg.de/
superfamily http://supfam.org/SUPERFAMILY/cgi-bin/scop.cgi?ipid=SSF51206
uniprot http://www.uniprot.org/tissues/37
wwpdb http://www.wwpdb.org/