Gene Ontology Tools
AutoGO	http://autogo.biopathway.org/
babelomics	http://www.babelomics.org/
BioInfoBank	http://cancer.bioinfo.pl/
Bioportal	http://bioportal.bioontology.org/
cgap	http://cgap.nci.nih.gov/Tools
CGAP GO Browser	http://cgap.nci.nih.gov/Genes/GOBrowser
CIMminer	http://discover.nci.nih.gov/gominer/cim.jsp
clueGO	http://www.ici.upmc.fr/cluego/cluegoDownload.shtml
COBrA	http://www.xspan.org/cobra/
DAVID	http://david.abcc.ncifcrf.gov/
DAVID	http://niaid.abcc.ncifcrf.gov/
FunSpec	http://funspec.med.utoronto.ca/
Gavin Sherlock -GO-TermFinder	http://search.cpan.org/dist/GO-TermFinder/
Gene Ontology	http://www.geneontology.org/
Generalized Venn Diagrams	http://www.informatik.uni-ulm.de/ni/mitarbeiter/HKestler/vennm/
Generic GO Term Mapper	http://go.princeton.edu/cgi-bin/GOTermMapper
GeneTrail	http://genetrail.bioinf.uni-sb.de/
GenMAPP - Home Page	http://www.genmapp.org/
GO2 gene	http://lgsun.grc.nia.nih.gov/geneindex/mm9/TFBS/GOlist.html
GOArray	http://ycmi.med.yale.edu/gomine
GOCat	http://eagl.unige.ch/GOCat/
GOChase	http://www.snubi.org/software/GOChase/
gocluster	http://www.biozentrum.unibas.ch/gocluster/
GOEAST	http://omicslab.genetics.ac.cn/GOEAST/
gofish	http://llama.mshri.on.ca/gofish/GoFishWelcome.html
GoMine	http://discover.nci.nih.gov/gominer/htgm.jsp
gominer	http://discover.nci.nih.gov/gominer/
GOrilla	http://cbl-gorilla.cs.technion.ac.il/
gorilla a tool for discovery	http://cbl-gorilla.cs.technion.ac.il
GOstat	http://gostat.wehi.edu.au/
GOstat	http://gostat.wehi.edu.au/cgi-bin/goStat.pl
GOToolBox	http://genome.crg.es/GOToolBox/
GSA Gene Set Analysis	http://www-stat.stanford.edu/~tibs/GSA/index.html
g-sesame	http://bioinformatics.clemson.edu/G-SESAME/
Guide to GO Evidence Codes	http://www.geneontology.org/GO.evidence.shtml
InGOt (proprietary)	http://www.inpharmatica.co.uk/ingot/
Manatee	http://manatee.sourceforge.net/
MGI GO Browser	http://www.informatics.jax.org/searches/GO_form.shtml
NetAffx Gene Ontology Mining Tool	https://www.affymetrix.com/site/login/login.affx
PANDORA	http://www.pandora.cs.huji.ac.il/
PANTHER - Family Information	http://www.pantherdb.org/panther/family.do?clsAccession=PTHR11829
QuickGO	http://www.ebi.ac.uk/QuickGO/
QuickGO at EBI	http://www.ebi.ac.uk/ego/
SOURCE	https://source-search.princeton.edu/
The Open Biomedical Ontologies	http://obofoundry.org/