Motifs
Prosite	http://ca.expasy.org/prosite/
Modbase	http://modbase.compbio.ucsf.edu/modbase-cgi-new/index.cgi
Motifs and domains	http://motif.genome.ad.jp/
Prints	http://umber.sbs.man.ac.uk/dbbrowser/PRINTS/
Pfam	http://www.sanger.ac.uk/Software/Pfam/
GRNInfer	http://digbio.missouri.edu/grninfer/
IMOTdb	http://caps.ncbs.res.in/imotdb/
EMD algorithm	http://dragon.bio.purdue.edu/EMD/
Smart	http://smart.embl-heidelberg.de/
ModuleMiner	http://tomcatbackup.esat.kuleuven.be/moduleminer/
Stamp	http://www.benoslab.pitt.edu/stamp/
Improbizer	http://users.soe.ucsc.edu/~kent/improbizer/improbizer.html
ModuleMiner	http://aulne8.esat.kuleuven.be/moduleminer/
Transcription Factor Scan Tool	http://biotools.umassmed.edu/cgi-bin/biobin/tfscan
Protein Motifs	http://bioweb.uwlax.edu/GenWeb/Molecular/Seq_Anal/Protein_Motifs/protein_motifs.htm
EvoPrinter	http://evoprinter.ninds.nih.gov/
CompMoby	http://genome.ucsf.edu/compmoby/
cisregul	http://klab.tch.harvard.edu/resources/cisregul/index.html
MEME	http://meme.sdsc.edu/meme/intro.html
ASAP	http://servers.binf.ku.dk/asap/
Sinha Laboratory	http://veda.cs.uiuc.edu/sinhalab/?page_id=25
Transplorer	http://www.biobase.de/pages/guided_tours/transplorer/transplorer_tour.html
oPOSSUM	http://www.cisreg.ca/cgi-bin/oPOSSUM/opossum
CMA	http://www.gene-regulation.com/cgi-bin/CMA/cma.cgi
Pmatch	http://www.gene-regulation.com/cgi-bin/pub/programs/pmatch/bin/p-match.cgi
IFTI	http://www.ifti.org/
funsite	http://wwwmgs.bionet.nsc.ru/mgs/papers/kel_ae/ismb_95/
Gene3D	http://gene3d.biochem.ucl.ac.uk/Gene3D/
Scop	http://scop.mrc-lmb.cam.ac.uk/
TMHMM	http://www.cbs.dtu.dk/services/TMHMM-1.0/
TMPred	http://www.ch.embnet.org/software/TMPRED_form.html
TIGRFAM	http://www.tigr.org/TIGRFAMs/
NPSA	http://npsa-pbil.ibcp.fr/cgi-bin/npsa_automat.pl?page=/NPSA/npsa_server.html
DIRE	http://dire.dcode.org/
ECR Browser	http://ecrbrowser.dcode.org/
GenomeNet	http://www.genome.ad.jp/
TELIS	http://www.telis.ucla.edu/index.htm
Transfac	https://genometrafac.cchmc.org/genome-trafac/index.jsp