Promoter Prediction Tools
Ann-spec	http://www.cbs.dtu.dk/services/DNAarray/ann-spec.php
bioprospector	http://ai.stanford.edu/~xsliu/BioProspector/
carrie	http://zlab.bu.edu/CarrieServer/html/
cma	http://www.gene-regulation.com/pub/programs/cma/CMA.html
consite	http://mordor.cgb.ki.se/cgi-bin/CONSITE/consite
Core promoter	http://rulai.cshl.org/tools/genefinder/CPROMOTER/index.htm
CpG promoter	http://rulai.cshl.org/tools/CpG_promoter/
crème	http://dire.dcode.org
dbtss	http://dbtss.hgc.jp/index.html
FirstEF	http://rulai.cshl.org/tools/FirstEF/
Neural Network Promoter Prediction	http://www.fruitfly.org/seq_tools/promoter.html
OTFBS	http://www.bioinfo.tsinghua.edu.cn/~zhengjsh/OTFBS/
ProGA	http://wwwmgs.bionet.nsc.ru/mgs/programs/proga/
Promoter 2.0 Prediction Server	http://www.cbs.dtu.dk/services/Promoter/
Promoter Binding Element Database	http://exon.cshl.org/cgi-bin/atprobe/atprobe.pl
ScanACE & AlignACE	http://arep.med.harvard.edu/mrnadata/mrnasoft.html
Tfsitescan	http://www.ifti.org/cgi-bin/ifti/Tfsitescan.pl
toucan	http://homes.esat.kuleuven.be/~saerts/software/toucan.php
TSSG	http://www.softberry.com/berry.phtml?topic=tssg&group=help&subgroup=promoter
TSSG/W	http://www.softberry.com/berry.phtml?topic=tssw&group=programs&subgroup=promoter