Alignment tools
Alfresco	genome sequence analysis
ALIGN	Compendium of Protein Sequnce Alignments
Alignment App	pairwise alignment
BCM Search Launcher	multiple alignments online
Block Maker	finds conserved blocks
Blocks Multiple Alignment Processor	Multiple Alignment Processor
BOXSHADE	Printing and Shading of Multiple-Alignment files
ClustalW	multiple sequence alignment