Databases of genes and transcripts 
5'SAGE  5'-end Serial Analysis of Gene Expression database 
Allen Brain Atlas  expression data for ~8000 transcripts (adult males in the sagittal plane).
Allgenes Human predicted gene index/catalog
BGEM
cgap database genes
Color Genes in the Genome Map
DBTSS  Database of Transcription Start Sites.
EGAD The Expressed Gene Anatomy Database 
EMAP expression of ~800 genes during 
Emap
EMBL CDS coding sequence database
eugenes database of genes
Full Length cDNA Database
gene atlas
Gene Expression Markup Language
gene expression profile
genenotes gene note
GenePaint 
GenLink - Human genetics resource 
GENSAT
getmaps
GXD the Mouse Gene Expression Database 
H-ANGLE The Human Anatomic Gene Expression Library 
h-invitational database genes
humancyc database genes and metabolism
infobiogen gene info
MGC Mammalian Gene Collection 
Mouse Brain Library. 
Mouse gene knockouts db 
MouseUnigenes
NIAS DNA Bank
omim genes
pharmGKB
Promolign gene info
RnUnigene Rat transcripts in GenBank (EST clusters)
TIGR gene indices
Transterm Database of transcript-related information