Promoter Databases and sites for analysis, prediction and search
AlignACE  motif-finding algorithm. 
Promoter Binding Element Database Arabidopsis thaliana promoter binding element database 
CpG promoter promoter mapping using CpG islands
Core promoter to predict putative Transcriptional Start Site (TSS)
dbtss  Database of Transcriptional Start Sites 
Dragon Promoter Finder an advanced system for promoter recognition in vertebrates
EPD  an annotated non-redundant collection of eukaryotic POL II promoters 
FirstEF a 5' terminal exon and promoter prediction program
Human Promoter Database Search for transcriptional start site 
Mcpromoter A statistical tool for the prediction of transcription start sites 
Motif Explorer  Motif & promoter visualization 
Neural Network Promoter Prediction Neural Network Promoter Prediction
paint Promoter Analysis and Interaction Network Toolset 
ProGA  Eukaryotic Promoters Recognition by Genetic Algorithm 
PromoSer  Promoter extraction service
Promoter 2.0 Prediction Server  predicts transcription start sites of vertebrate PolII promoters in DNA sequences
Promoter Prediction Scans a vertebrate nucleotide sequence for putative promoters 
Promoter Prediction - U. Ohler  aiming at the exact localization of eukaryotic RNA polymerase II transcription start sites
PromoterWise  BioPerl module 
proscan scores homologies with putative eukaryotic Pol II promoter sequences 
Regulatory Region Analysis First searches in a nucleotide sequence for putative promoter regions and subsequently scans them for possible transcription factor binding sites 
ScanACE & AlignACE
Tfsitescan infor promoter sequence analysis tended for promoter sequence analysis 
TSSG Recognition of human PolII promoter region and start of transcription
TSSG/W predicts potential transcription start positions by linear discriminant function