Text Mining Tools
alias server list of alias in medline
Arizona Relation Parser use of a broad coverage syntax-semantic hybrid grammar
Arrowsmith A tool for identifying links between two sets of Medline articles 
askMEDLINE retrieves articles on a specific question asked
BioIE extracts informative sentences from the biomedical literature
biorat A search engine and information extraction tool for biological research 
BITOLA discovers potentially new relations between biomedical concepts
Chilibot Retrieve signal transduction literature. 
ConceptLink explores term relationships between terms in a collection
Don Swanson's Arrowsmith site interactive software that extends the power of a MEDLINE search
EasyPubMed helps in pubmed search, downloadable
garban analysis and rapid functional annotation of microarray data
GNF SymAtlas database of genes and expression data 
GoMiner high throughput gene ontology search
ihop  create a gene network of co-mentioned genes.
Litlinker find possible new connections between medical terms 
MedBlast searching articles related to a biological sequence
medlineR an open source library in R for Medline literature data mining 
medscan Converting Scientific Text to a Database of Functional Relation
microgenie semi-automated querying of PubMed using gene Ids
mywest effective mining of web interfaced biomolecular databanks
PhenogenesViewer  visualizing multidimensional genotypic and phenotypic  information together 
PICO search interface
prime database of gene function association extracted from PubMed
prolink an integrated protein resource for literature mining 
Pubcrawler alerting service that searches custom queries in PubMed
PubGene users to analyze gene expression data with literature network information
PubMatrix allows comparison of any list of terms against any other list of terms
thea ontology driven analysis of microarray data
transminer Associations among objects such as genes, proteins,and drugs 
Vivisimo searches and arranges the output into clusters of articles t
XplorMed to assist browsing articles by topics using chains of word associations.