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| Gene Regulation |
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| Ahab |
http://gaspard.bio.nyu.edu/Ahab.html |
| VISTA |
http://www-gsd.lbl.gov/vista/index.shtml |
| PipMaker |
http://pipmaker.bx.psu.edu/pipmaker/ |
| CisReg |
http://www.mit.edu/~kreiman/resources/cisregul/user_input.html |
| concise scanner |
http://trafac.cchmc.org/trafac/ |
| ConSite |
http://mordor.cgb.ki.se/cgi-bin/CONSITE/consite |
| CREME |
http://www.icsi.berkeley.edu/~roded/creme.html |
| doop |
http://doop.abc.hu |
| gene regulation |
http://gene-regulation.com/pub/programs.html |
| LAGAN |
http://lagan.stanford.edu/lagan_web/index.shtml |
| motive sampler |
http://homes.esat.kuleuven.be/~thijs/Work/MotifSampler.html |
| MSCAN |
http://tfscan.cgb.ki.se/cgi-bin/MSCAN |
| nsite |
http://www.softberry.com/berry.phtml?topic=nsite&group=programs&subgroup=promoter |
| nsitem |
http://www.softberry.com/berry.phtml?topic=nsitem&group=programs&subgroup=promoter |
| opossum |
http://www.cisreg.ca/oPOSSUM/ |
| orca |
http://burgundy.cmmt.ubc.ca/cgi-bin/OrcaTK/orcatk |
| Oregano |
http://www.oreganno.org/oregano/Index.jsp |
| OTFBS |
http://www.bioinfo.tsinghua.edu.cn/~zhengjsh/OTFBS/ |
| PAP |
http://bioinformatics.wustl.edu/webTools/portalModule/PromoterSearch.do |
| Patch |
http://www.gene-regulation.com/pub/programs.html#patch |
| plantcare |
http://bioinformatics.psb.ugent.be/webtools/plantcare/html/search_CARE.html |
| Pmatch |
http://www.gene-regulation.com/pub/programs.html#pmatch |
| pobo |
http://www.bioinfo.biocenter.helsinki.fi/poxo |
| premod |
http://genomequebec.mcgill.ca/PReMod/welcome.do;jsessionid=C0A051D4F47558387F3CA5DBEA34EE79 |
| promo |
http://alggen.lsi.upc.es/cgi-bin/promo_v3/promo/promoinit.cgi?dirDB=TF_8.3 |
| RSAT |
http://rsat.ulb.ac.be/rsat/ |
| rVISTA |
http://rvista.dcode.org/ |
| SeqVista |
http://zlab.bu.edu/SeqVISTA/ |
| sesimcmc |
http://favorov.imb.ac.ru/SeSiMCMC/ |
| Sitecon |
http://wwwmgs.bionet.nsc.ru/cgi-bin/mgs/sitecon/sitecon.pl?stage=0 |
| Tfbind |
http://tfbind.ims.u-tokyo.ac.jp/ |
| TFBScluster |
http://hscl.cimr.cam.ac.uk/TFBScluster_genome_34.html |
| TFBSfinder |
http://cg1.iis.sinica.edu.tw/~TFBSfinder/ |
| Tfsearch |
http://www.cbrc.jp/research/db/TFSEARCH.html |
| tiprod |
http://tiprod.cbi.pku.edu.cn:8080/index.html |
| toucan |
http://homes.esat.kuleuven.be/~saerts/software/toucan.php |
| tractorDB |
http://www.bioinfo.cu/Tractor_DB/ |
| trafac |
http://trafac.cchmc.org/trafac/index.jsp |
| TRAFAC |
http://trafac.chmcc.org/trafac/index.jsp |
| transcompel |
http://www.gene-regulation.com/pub/databases.html#transcompel |
| TransFac |
http://www.gene-regulation.com/cgi-bin/pub/databases/transfac/search.cgi |
| transpath |
http://www.gene-regulation.com/cgi-bin/pub/databases/transpath/search.cgi |
| transplorer |
http://www.biobase.de/pages/guided_tours/transplorer/transplorer_tour.html |
| tred |
http://rulai.cshl.edu/cgi-bin/TRED/tred.cgi?process=home |
| T-Reg Comparator |
http://treg.molgen.mpg.de/cgi-bin/pfm_meme_form.pl |
| trsDB |
http://bioinf.uab.es/cgi-bin/trsdb/trsdb.pl |
| utr resource |
http://bighost.ba.itb.cnr.it/UTR/ |
| vega ensembl |
http://vega.sanger.ac.uk/Multi/blastview |
| webweedeer |
http://www.pesolelab.it/index.php?mod=04_Tools |
| yebis |
http://www-btls.jst.go.jp/cgi-bin/Tools/MotifExtraction/index.cgi |