| Motifs |
|
|
|
| Prosite |
http://ca.expasy.org/prosite/ |
| Modbase |
http://modbase.compbio.ucsf.edu/modbase-cgi-new/index.cgi |
| Motifs and domains |
http://motif.genome.ad.jp/ |
| Prints |
http://umber.sbs.man.ac.uk/dbbrowser/PRINTS/ |
| Pfam |
http://www.sanger.ac.uk/Software/Pfam/ |
| GRNInfer |
http://digbio.missouri.edu/grninfer/ |
| IMOTdb |
http://caps.ncbs.res.in/imotdb/ |
| EMD algorithm |
http://dragon.bio.purdue.edu/EMD/ |
| Smart |
http://smart.embl-heidelberg.de/ |
| ModuleMiner |
http://tomcatbackup.esat.kuleuven.be/moduleminer/ |
| Stamp |
http://www.benoslab.pitt.edu/stamp/ |
| Improbizer |
http://users.soe.ucsc.edu/~kent/improbizer/improbizer.html |
| ModuleMiner |
http://aulne8.esat.kuleuven.be/moduleminer/ |
| Transcription Factor Scan Tool |
http://biotools.umassmed.edu/cgi-bin/biobin/tfscan |
| Protein Motifs |
http://bioweb.uwlax.edu/GenWeb/Molecular/Seq_Anal/Protein_Motifs/protein_motifs.htm |
| EvoPrinter |
http://evoprinter.ninds.nih.gov/ |
| CompMoby |
http://genome.ucsf.edu/compmoby/ |
| cisregul |
http://klab.tch.harvard.edu/resources/cisregul/index.html |
| MEME |
http://meme.sdsc.edu/meme/intro.html |
| ASAP |
http://servers.binf.ku.dk/asap/ |
| Sinha Laboratory |
http://veda.cs.uiuc.edu/sinhalab/?page_id=25 |
| Transplorer |
http://www.biobase.de/pages/guided_tours/transplorer/transplorer_tour.html |
| oPOSSUM |
http://www.cisreg.ca/cgi-bin/oPOSSUM/opossum |
| CMA |
http://www.gene-regulation.com/cgi-bin/CMA/cma.cgi |
| Pmatch |
http://www.gene-regulation.com/cgi-bin/pub/programs/pmatch/bin/p-match.cgi |
| IFTI |
http://www.ifti.org/ |
| funsite |
http://wwwmgs.bionet.nsc.ru/mgs/papers/kel_ae/ismb_95/ |
| Gene3D |
http://gene3d.biochem.ucl.ac.uk/Gene3D/ |
| Scop |
http://scop.mrc-lmb.cam.ac.uk/ |
| TMHMM |
http://www.cbs.dtu.dk/services/TMHMM-1.0/ |
| TMPred |
http://www.ch.embnet.org/software/TMPRED_form.html |
| TIGRFAM |
http://www.tigr.org/TIGRFAMs/ |
| NPSA |
http://npsa-pbil.ibcp.fr/cgi-bin/npsa_automat.pl?page=/NPSA/npsa_server.html |
| DIRE |
http://dire.dcode.org/ |
| ECR Browser |
http://ecrbrowser.dcode.org/ |
| GenomeNet |
http://www.genome.ad.jp/ |
| TELIS |
http://www.telis.ucla.edu/index.htm |
| Transfac |
https://genometrafac.cchmc.org/genome-trafac/index.jsp |